Digital Pathology
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Contents:
filtration package
aws_utils package
dataset package
model_manager package
unified_image_reader package
adapters package
Digital Pathology
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Index
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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W
A
Adapter (class in adapters.adapter)
(class in unified_image_reader.adapters.adapter)
adapters
module
adapters.adapter
module
adapters.slideio
module
adapters.vips
module
add_filter() (filtration.filter_manager.FilterManager method)
apply_args_and_kwargs() (in module dataset.util)
augment_region() (dataset.dataset.Dataset method)
authorize() (in module aws_utils.glacier_utils)
aws_utils.glacier_utils
module
aws_utils.s3_sagemaker_utils
module
C
clear_table() (in module dataset.filtration_cache)
convert_rgb_to_greyscale() (filtration.filter.FilterBlackAndWhite method)
convert_rgb_to_hsv() (filtration.filter.FilterHSV method)
D
dataset
module
Dataset (class in dataset.dataset)
dataset.config
module
dataset.dataset
module
dataset.filtration_cache
module
dataset.label_extractor
module
dataset.label_manager
module
dataset.util
module
dims (unified_image_reader.image.Image property)
(unified_image_reader.image_reader.ImageReader property)
(unified_image_reader.image_reader.ImageReaderDirectory property)
download_data() (aws_utils.s3_sagemaker_utils.S3SageMakerUtils method)
E
extract_labels() (dataset.label_extractor.LabelExtractor static method)
(dataset.label_extractor.LabelExtractorCSV static method)
(dataset.label_extractor.LabelExtractorJSON static method)
(dataset.label_extractor.LabelExtractorNoLabels static method)
(dataset.label_extractor.LabelExtractorParentDir static method)
F
Filter (class in filtration.filter)
filter() (filtration.filter.Filter method)
(filtration.filter.FilterBlackAndWhite method)
(filtration.filter.FilterFocusMeasure method)
(filtration.filter.FilterHistolab method)
(filtration.filter.FilterHSV method)
(filtration.filter.FilterRandom method)
(filtration.filter_manager.FilterManager method)
FilterBlackAndWhite (class in filtration.filter)
FilterFocusMeasure (class in filtration.filter)
FilterHistolab (class in filtration.filter)
FilterHSV (class in filtration.filter)
FilterManager (class in filtration.filter_manager)
FilterRandom (class in filtration.filter)
filtration.filter
module
filtration.filter_manager
module
FiltrationCache (class in dataset.filtration_cache)
FiltrationCache.Description (class in dataset.filtration_cache)
G
get() (dataset.label_extractor.LabelExtractorNoLabels.DefaultDictWithGet method)
get_height() (adapters.adapter.Adapter method)
(adapters.slideio.SlideIO method)
(adapters.vips.VIPS method)
(unified_image_reader.adapters.adapter.Adapter method)
(unified_image_reader.adapters.slideio.SlideIO method)
(unified_image_reader.adapters.vips.VIPS method)
get_label() (dataset.dataset.Dataset method)
get_label_distribution() (dataset.dataset.Dataset method)
get_metadata() (dataset.filtration_cache.FiltrationCache method)
get_model_info() (model_manager.model_manager.ModelManager method)
get_model_name() (in module model_manager.model_manager)
get_region() (adapters.adapter.Adapter method)
(adapters.slideio.SlideIO method)
(adapters.vips.VIPS method)
(dataset.dataset.Dataset method)
(unified_image_reader.adapters.adapter.Adapter method)
(unified_image_reader.adapters.slideio.SlideIO method)
(unified_image_reader.adapters.vips.VIPS method)
(unified_image_reader.image.Image method)
(unified_image_reader.image_reader.ImageReader method)
(unified_image_reader.image_reader.ImageReaderDirectory method)
get_region_labels_as_list() (dataset.dataset.Dataset method)
get_region_location_from_index() (dataset.dataset.Dataset method)
get_status() (dataset.filtration_cache.FiltrationCache method)
get_width() (adapters.adapter.Adapter method)
(adapters.slideio.SlideIO method)
(adapters.vips.VIPS method)
(unified_image_reader.adapters.adapter.Adapter method)
(unified_image_reader.adapters.slideio.SlideIO method)
(unified_image_reader.adapters.vips.VIPS method)
H
has_data() (dataset.filtration_cache.FiltrationCache method)
has_model() (model_manager.model_manager.ModelManager method)
height (unified_image_reader.image.Image property)
(unified_image_reader.image_reader.ImageReader property)
(unified_image_reader.image_reader.ImageReaderDirectory property)
I
Image (class in unified_image_reader.image)
ImageReader (class in unified_image_reader.image_reader)
ImageReaderDirectory (class in unified_image_reader.image_reader)
InvalidCoordinatesException
InvalidDimensionsException
iterate_by_file() (dataset.dataset.Dataset method)
iterate_by_n() (in module model_manager.util)
L
LabelExtractor (class in dataset.label_extractor)
LabelExtractorCSV (class in dataset.label_extractor)
LabelExtractorJSON (class in dataset.label_extractor)
LabelExtractorNoLabels (class in dataset.label_extractor)
LabelExtractorNoLabels.DefaultDictWithGet (class in dataset.label_extractor)
LabelExtractorParentDir (class in dataset.label_extractor)
LabelManager (class in dataset.label_manager)
listdir_recursive() (in module dataset.util)
load_model() (model_manager.model_manager.ModelManager method)
M
metadata_fields (dataset.filtration_cache.FiltrationCache attribute)
model_manager
module
model_manager.config
module
model_manager.exceptions
module
model_manager.model_manager
module
model_manager.util
module
ModelFilesCorrupted
ModelManager (class in model_manager.model_manager)
models (model_manager.model_manager.ModelManager property)
module
adapters
adapters.adapter
adapters.slideio
adapters.vips
aws_utils.glacier_utils
aws_utils.s3_sagemaker_utils
dataset
dataset.config
dataset.dataset
dataset.filtration_cache
dataset.label_extractor
dataset.label_manager
dataset.util
filtration.filter
filtration.filter_manager
model_manager
model_manager.config
model_manager.exceptions
model_manager.model_manager
model_manager.util
unified_image_reader
unified_image_reader.adapters
unified_image_reader.adapters.adapter
unified_image_reader.adapters.slideio
unified_image_reader.adapters.vips
unified_image_reader.config
unified_image_reader.image
unified_image_reader.image_reader
N
NoOverwrite
number_of_regions() (dataset.dataset.Dataset method)
(unified_image_reader.image.Image method)
(unified_image_reader.image_reader.ImageReader method)
(unified_image_reader.image_reader.ImageReaderDirectory method)
O
open_file() (in module model_manager.util)
P
postprocess_filepath() (in module dataset.filtration_cache)
preprocess() (dataset.filtration_cache.FiltrationCache method)
(in module dataset.filtration_cache)
preprocess_filepath() (in module dataset.filtration_cache)
preprocess_filtration() (in module dataset.filtration_cache)
process_region() (in module dataset.filtration_cache)
R
region_index_to_coordinates() (unified_image_reader.image_reader.ImageReader method)
restore_object() (in module aws_utils.glacier_utils)
S
S3SageMakerUtils (class in aws_utils.s3_sagemaker_utils)
save_model() (model_manager.model_manager.ModelManager method)
should_have_model() (model_manager.model_manager.ModelManager method)
ShouldHaveModel
SlideIO (class in adapters.slideio)
(class in unified_image_reader.adapters.slideio)
starmap_with_kwargs() (in module dataset.util)
status_update() (in module aws_utils.glacier_utils)
T
ThreadingLock (class in dataset.util)
U
unified_image_reader
module
unified_image_reader.adapters
module
unified_image_reader.adapters.adapter
module
unified_image_reader.adapters.slideio
module
unified_image_reader.adapters.vips
module
unified_image_reader.config
module
unified_image_reader.image
module
unified_image_reader.image_reader
module
UnsupportedFileType
UnsupportedFormatException
upload_data() (aws_utils.s3_sagemaker_utils.S3SageMakerUtils method)
V
validate_region() (unified_image_reader.image_reader.ImageReader method)
variance_of_laplacian() (filtration.filter.FilterFocusMeasure method)
VIPS (class in adapters.vips)
(class in unified_image_reader.adapters.vips)
W
width (unified_image_reader.image.Image property)
(unified_image_reader.image_reader.ImageReader property)
(unified_image_reader.image_reader.ImageReaderDirectory property)