Index

A

Adapter (class in adapters.adapter) (class in unified_image_reader.adapters.adapter) adapters module adapters.adapter module adapters.slideio module adapters.vips module

add_filter() (filtration.filter_manager.FilterManager method) apply_args_and_kwargs() (in module dataset.util) augment_region() (dataset.dataset.Dataset method) authorize() (in module aws_utils.glacier_utils) aws_utils.glacier_utils module aws_utils.s3_sagemaker_utils module

C

clear_table() (in module dataset.filtration_cache)

convert_rgb_to_greyscale() (filtration.filter.FilterBlackAndWhite method) convert_rgb_to_hsv() (filtration.filter.FilterHSV method)

D

dataset module Dataset (class in dataset.dataset) dataset.config module dataset.dataset module dataset.filtration_cache module

dataset.label_extractor module dataset.label_manager module dataset.util module dims (unified_image_reader.image.Image property) (unified_image_reader.image_reader.ImageReader property) (unified_image_reader.image_reader.ImageReaderDirectory property) download_data() (aws_utils.s3_sagemaker_utils.S3SageMakerUtils method)

E

extract_labels() (dataset.label_extractor.LabelExtractor static method) (dataset.label_extractor.LabelExtractorCSV static method) (dataset.label_extractor.LabelExtractorJSON static method) (dataset.label_extractor.LabelExtractorNoLabels static method) (dataset.label_extractor.LabelExtractorParentDir static method)

F

Filter (class in filtration.filter) filter() (filtration.filter.Filter method) (filtration.filter.FilterBlackAndWhite method) (filtration.filter.FilterFocusMeasure method) (filtration.filter.FilterHistolab method) (filtration.filter.FilterHSV method) (filtration.filter.FilterRandom method) (filtration.filter_manager.FilterManager method) FilterBlackAndWhite (class in filtration.filter) FilterFocusMeasure (class in filtration.filter)

FilterHistolab (class in filtration.filter) FilterHSV (class in filtration.filter) FilterManager (class in filtration.filter_manager) FilterRandom (class in filtration.filter) filtration.filter module filtration.filter_manager module FiltrationCache (class in dataset.filtration_cache) FiltrationCache.Description (class in dataset.filtration_cache)

G

get() (dataset.label_extractor.LabelExtractorNoLabels.DefaultDictWithGet method) get_height() (adapters.adapter.Adapter method) (adapters.slideio.SlideIO method) (adapters.vips.VIPS method) (unified_image_reader.adapters.adapter.Adapter method) (unified_image_reader.adapters.slideio.SlideIO method) (unified_image_reader.adapters.vips.VIPS method) get_label() (dataset.dataset.Dataset method) get_label_distribution() (dataset.dataset.Dataset method) get_metadata() (dataset.filtration_cache.FiltrationCache method) get_model_info() (model_manager.model_manager.ModelManager method) get_model_name() (in module model_manager.model_manager) get_region() (adapters.adapter.Adapter method) (adapters.slideio.SlideIO method) (adapters.vips.VIPS method) (dataset.dataset.Dataset method) (unified_image_reader.adapters.adapter.Adapter method) (unified_image_reader.adapters.slideio.SlideIO method) (unified_image_reader.adapters.vips.VIPS method) (unified_image_reader.image.Image method) (unified_image_reader.image_reader.ImageReader method) (unified_image_reader.image_reader.ImageReaderDirectory method)

get_region_labels_as_list() (dataset.dataset.Dataset method) get_region_location_from_index() (dataset.dataset.Dataset method) get_status() (dataset.filtration_cache.FiltrationCache method) get_width() (adapters.adapter.Adapter method) (adapters.slideio.SlideIO method) (adapters.vips.VIPS method) (unified_image_reader.adapters.adapter.Adapter method) (unified_image_reader.adapters.slideio.SlideIO method) (unified_image_reader.adapters.vips.VIPS method)

H

has_data() (dataset.filtration_cache.FiltrationCache method) has_model() (model_manager.model_manager.ModelManager method)

height (unified_image_reader.image.Image property) (unified_image_reader.image_reader.ImageReader property) (unified_image_reader.image_reader.ImageReaderDirectory property)

I

Image (class in unified_image_reader.image) ImageReader (class in unified_image_reader.image_reader) ImageReaderDirectory (class in unified_image_reader.image_reader)

InvalidCoordinatesException InvalidDimensionsException iterate_by_file() (dataset.dataset.Dataset method) iterate_by_n() (in module model_manager.util)

L

LabelExtractor (class in dataset.label_extractor) LabelExtractorCSV (class in dataset.label_extractor) LabelExtractorJSON (class in dataset.label_extractor) LabelExtractorNoLabels (class in dataset.label_extractor)

LabelExtractorNoLabels.DefaultDictWithGet (class in dataset.label_extractor) LabelExtractorParentDir (class in dataset.label_extractor) LabelManager (class in dataset.label_manager) listdir_recursive() (in module dataset.util) load_model() (model_manager.model_manager.ModelManager method)

M

metadata_fields (dataset.filtration_cache.FiltrationCache attribute) model_manager module model_manager.config module model_manager.exceptions module model_manager.model_manager module model_manager.util module ModelFilesCorrupted ModelManager (class in model_manager.model_manager) models (model_manager.model_manager.ModelManager property) module adapters adapters.adapter adapters.slideio adapters.vips aws_utils.glacier_utils aws_utils.s3_sagemaker_utils dataset dataset.config dataset.dataset dataset.filtration_cache dataset.label_extractor dataset.label_manager dataset.util filtration.filter filtration.filter_manager model_manager model_manager.config model_manager.exceptions model_manager.model_manager model_manager.util unified_image_reader unified_image_reader.adapters unified_image_reader.adapters.adapter unified_image_reader.adapters.slideio unified_image_reader.adapters.vips unified_image_reader.config unified_image_reader.image unified_image_reader.image_reader

N

NoOverwrite number_of_regions() (dataset.dataset.Dataset method) (unified_image_reader.image.Image method) (unified_image_reader.image_reader.ImageReader method) (unified_image_reader.image_reader.ImageReaderDirectory method)

O

open_file() (in module model_manager.util)

P

postprocess_filepath() (in module dataset.filtration_cache) preprocess() (dataset.filtration_cache.FiltrationCache method) (in module dataset.filtration_cache)

preprocess_filepath() (in module dataset.filtration_cache) preprocess_filtration() (in module dataset.filtration_cache) process_region() (in module dataset.filtration_cache)

R

region_index_to_coordinates() (unified_image_reader.image_reader.ImageReader method)

restore_object() (in module aws_utils.glacier_utils)

S

S3SageMakerUtils (class in aws_utils.s3_sagemaker_utils) save_model() (model_manager.model_manager.ModelManager method) should_have_model() (model_manager.model_manager.ModelManager method) ShouldHaveModel

SlideIO (class in adapters.slideio) (class in unified_image_reader.adapters.slideio) starmap_with_kwargs() (in module dataset.util) status_update() (in module aws_utils.glacier_utils)

T

ThreadingLock (class in dataset.util)

U

unified_image_reader module unified_image_reader.adapters module unified_image_reader.adapters.adapter module unified_image_reader.adapters.slideio module unified_image_reader.adapters.vips module

unified_image_reader.config module unified_image_reader.image module unified_image_reader.image_reader module UnsupportedFileType UnsupportedFormatException upload_data() (aws_utils.s3_sagemaker_utils.S3SageMakerUtils method)

V

validate_region() (unified_image_reader.image_reader.ImageReader method) variance_of_laplacian() (filtration.filter.FilterFocusMeasure method)

VIPS (class in adapters.vips) (class in unified_image_reader.adapters.vips)

W

width (unified_image_reader.image.Image property) (unified_image_reader.image_reader.ImageReader property) (unified_image_reader.image_reader.ImageReaderDirectory property)